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X-ray Structures

Important note for CSGID staff! Before depositing your structure, make sure it follows the guidelines here " PDB deposit guidelines" and here "Crystal structure quality metrics for PDB deposition."

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Page 1 of 36, showing 20 records  out of 710 total, starting on record 1 structures.
Click on the title of a structure below to see more information about that structure.

Target IDP90781          community request

Title: Crystal Structure of Inosine 5''-monophosphate Dehydrogenase with the Internal Deletion Containing CBS Domain from Campylobacter jejuni
Authors: Kim, Y., Makowska-Grzyska, M., Gu, M., Hedstrom, L., Andesrson, W.F., Joachimiak, A. CSGID
PDB 4R7J (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: , inosine 5''-phosphate
Other ligands: (4S)-2-methyl-2,4-pentanediol, Chloride, glycerol, Sulfate
R: 17.4%
Rfree: 20.5%
Resolution: 2.12Å
Deposited: 2014-08-27
Released:

Target IDP01169          community request

Title: AtxA protein, a virulence regulator from Bacillus anthracis
Authors: J.Osipiuk,L.B.Horton,T.M.Koehler, W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4R6I (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: dodecyl-beta-d-maltoside
R: 19.9%
Rfree: 25.2%
Resolution: 2.65Å
Deposited: 2014-08-25
Released:

Target IDP92768          community request

Title: Crystal structure of a putative Cas1 enzyme from Vibrio phage ICP1
Authors: Stogios PJ, Wawrzak Z, Onopriyenko O, Yim V, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4W8K (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands:
R: 17.5%
Rfree: 20.7%
Resolution: 2.13Å
Deposited: 2014-08-24
Released:

Target IDP95031          community request

Title: Crystal structure of aminoglycoside acetyltransferase AAC(3)-Ib
Authors: Stogios PJ, Zhiyu Z, Evdokimova E, Yim V, Anderson WF, Savchenko A, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4W83 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with:
Other ligands:
R: 18.5%
Rfree: 21.9%
Resolution: 2.05Å
Deposited: 2014-08-22
Released:

Target IDP92645          community request

Title: Crystal structure of predicted N-acyltransferase (ypeA) in complex with acetyl-CoA from Escherichia coli
Authors: Filippova, E.V., Minasov, G., Winsor, G., Dubrovska, I., Shuvalova, L., Wolfe, A.J., Anderson, W.F., Center for Structural Genomics of Infectious Diseases
PDB 4QVT (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: acetyl coenzyme A
Other ligands: Sulfate
R: 19%
Rfree: 23.2%
Resolution: 1.95Å
Deposited: 2014-07-15
Released: 2014-07-30
Title: 1.28 Angstrom resolution crystal structure of predicted acyltransferase with acyl-CoA N-acyltransferase domain (ypeA) from Escherichia coli str. K-12 substr. MG1655
Authors: Halavaty, A.S. Filippova, E.V. Minasov, G. Flores, K.J. Dubrovska, I. Shuvalova, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4QUS (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: phosphate ion
Other ligands:
R: 11.1%
Rfree: 13.9%
Resolution: 1.28Å
Deposited: 2014-07-11
Released: 2014-07-23

Target IDP92622          community request

Title: Co-crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Cryptosporidium parvum with a Inhibitor N109
Authors: Kim, Y., Makowska-Grzyska, M., Maltseva, N., Gu, M., Sun,Z., Zhang, M., Cho, J.H., Khan, J., Suebsuwong, C., Vo, P., Hedstrom, L., Cuny, G., Andesrson, W.F. Joachimiak, A., CSGID
PDB 4QJ1 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: inosine 5''-phosphate, unknown
Other ligands: , ,
R: 20.5%
Rfree: 25.7%
Resolution: 2.42Å
Deposited: 2014-06-10
Released:

Target IDP90544          community request

Title: Crystal structure of dihydrofolate reductase from Yersinia pestis complexed with methotrexate
Authors: N.Maltseva, Y.Kim, M.Makowska-Grzyska, R.Mulligan, S.Shatsman, W.F.Anderson, A.Joachimiak, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4QI9 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with:
R: 19.3%
Rfree: 23.6%
Resolution: 2.3Å
Deposited: 2014-06-02
Released: 2014-07-02

Target IDP91106          community request

Title: 1.98 Angstrom Crystal Structure of Putative 5''-Nucleotidase from Staphylococcus aureus in complex with Adenosine.
Authors: Minasov, G., Nocadello, S., Shuvalova, L., Dubrovska, I., Winsor, J., Bagnoli, F., Falugi, F., Bottomley, M., Grandi, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4Q7F (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: (2r,3s,5r)-5-(6-amino-9h-purin-9-yl)-tetrahydro-2-(hydr oxymethyl)furan-3-ol, magnesium, unknown
R: 18.8%
Rfree: 21.8%
Resolution: 1.98Å
Deposited: 2014-04-24
Released: 2014-05-07

Target IDP92725          community request

Title: Crystal Structure of succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58 in complex with the Inhibitor Captopril
Authors: B.NOCEK, A.STARUS, R.HOLZ, W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID)
PDB 4PQA (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: l-captopril, Zinc ion
Other ligands: Sulfate
R: 16.4%
Rfree: 19.6%
Resolution: 1.78Å
Deposited: 2014-03-01
Released: 2014-04-30
Title: Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58
Authors: B.NOCEK,R.HOLZ,W.F.ANDERSON,A.JOACHIMIAK
PDB 4PPZ (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 17.6%
Rfree: 20.8%
Resolution: 2Å
Deposited: 2014-02-27
Released: 2014-03-27

Target IDP93954          community request

Title: Structure of West Nile Virus NS1 (176-352) with the protective 22NS1 antibody Fab.
Authors: Melissa A. Edeling, Daved H. Fremont
PDB 4OII (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 21.6%
Rfree: 26.5%
Resolution: 3Å
Deposited: 2014-02-23
Released:

Target IDP90246          community request

Title: Crystal structure of the catalytic domain of DapE protein from V.cholerea in the Zn bound form
Authors: B.Nocek,M.Makowska-Grzyska,M.Gu,R.Jedrzejczak,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4OP4 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with:
Other ligands: , , glycerol
R: 15.5%
Rfree: 18.2%
Resolution: 1.65Å
Deposited: 2014-01-29
Released: 2014-04-23
Title: The Crystal structure of the apo-catalytic domain of DapE protein from V.cholerea
Authors: B.Nocek,M.Makowska-Grzyska,M.Gu,R.Jedrzejczak,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4ONW (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: , , , glycerol
R: 15.7%
Rfree: 18%
Resolution: 1.65Å
Deposited: 2014-01-29
Released: 2014-04-23

Target IDP91216          community request

Title: Crystal Structure of a Putative Macrophage Growth Locus, subunit A From Francisella tularensis SCHU S4
Authors: Brunzelle, J.S. Wawrzak, Z. Skarina, T. Savchenko, A. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4OMV (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 19%
Rfree: 22.5%
Resolution: 2.75Å
Deposited: 2014-01-27
Released: 2014-01-27

Target IDP91975          community request

Title: Crystal structure of an ABC uptake transporter substrate binding protein from Streptococcus pneumoniae with Bound Histidine
Authors: J.S.BRUNZELLE,W.WAWRZAK,Y.YIM,M.KUDRITSKA,A.SAVCHENKO,W.F.ANDERSON, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID)
PDB 4OHN (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands:
R: 13.8%
Rfree: 15.3%
Resolution: 1.37Å
Deposited: 2014-01-21
Released: 2014-01-21

Target IDP91947          community request

Title: Crystal structure of the second substrate binding domain of a putative amino acid ABC transporter from Streptococcus pneumoniae Canada MDR_19A
Authors: Stogios PJ, Wawrzak Z, Kudritska M, Yim V, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4OEN (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: , Chloride, Sulfate
R: 16.3%
Rfree: 19.6%
Resolution: 1.65Å
Deposited: 2014-01-13
Released: 2014-01-22

Target IDP92076          community request

Title: 2.6 Angstrom Crystal Structure of Putative Phosphoglycerate Mutase 1 from Toxoplasma gondii.
Authors: Minasov, G., Ruan, J., Ngo, H., Shuvalova, L., Dubrovska, I., Flores, K., Shanmugam, D., Roos, D., Anderson, W.F., Center for Structural Genomics of Infectious Diseases.
PDB 4ODI (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: Sodium Ion
R: 19.9%
Rfree: 23.9%
Resolution: 2.6Å
Deposited: 2014-01-10
Released: 2014-01-22

Target IDP91778          community request

Title: Crystal structure of vancomycin resistance D,D-dipeptidase/D,D-pentapeptidase VanXYc D59S mutant in complex with D-Alanine-D-Alanine and Copper (II)
Authors: Stogios PJ, Evdokimova E, Meziane-Cherif D, Di Leo R, Yim V, Courvalin P, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4OAK (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with:
Other ligands: , , Chloride, magnesium, Sulfate
R: 19.1%
Rfree: 23.5%
Resolution: 2Å
Deposited: 2014-01-08
Released: 2014-01-15

Target IDP90854          community request

Title: 2.35 Angstrom resolution crystal structure of putative O-acetylhomoserine (thiol)-lyase (metY) from Campylobacter jejuni subsp. jejuni NCTC 11168 with N''-Pyridoxyl-Lysine-5''-Monophosphate at position 205
Authors: Halavaty, A.S. Brunzelle, J.S. Wawrzak, Z. Onopriyenko, O. Savchenko, A. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4OC9 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: 2-lysine(3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridi n-4-ylmethane)
Other ligands: glycerol, imidazole, phosphate ion
R: 20.5%
Rfree: 24.9%
Resolution: 2.35Å
Deposited: 2014-01-08
Released:
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