Structure of IDP91369

1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus.

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CSGID target
IDP91369 
PDB Id
4DB3 (NCBI MMDB) 
Authors
G.Minasov,Z.Wawrzak,O.Onopriyenko,T.Skarina,L.Papazisi,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
George Minasov 
Responsible lab
Northwestern University 
Deposition Date
Jan 13, 2012 
Release Date
Jan 25, 2012 

Annotation

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Ligands

Ligand code Name Ligand type
SO4 sulfate crystallization
CL chloride crystallization
ZN zinc biological
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 64  
Unit Cell

a=80.40Å, b=80.40Å, c=110.42Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.45-1.95Å (2.00-1.95Å)  
Rall(%)
17.0 
Rwork(%)
16.8 (25.6) 
Rfree(%)
19.8 (26.2) 
Num. observed reflections
29417 (2134) 
Num. Rfree reflections
1500 (110) 
Completeness(%)
99.9 (99.8) 

Model parameters

Num Atoms
2393  
Num Waters
193  
Num Hetatoms
215  
Model mean isotropic B factor
36.380Å2  
RMSD bond length
0.011Å  
RMSD bond angle
1.453°  
Filename uploaded
rcsb070107.pdb (uploaded on Jan 16, 2012 12:36 PM)  
Inserted
Jan 16, 2012