Structure of IDP92074

1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii with Tyrosine of Tag Bound to Active Site.

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CSGID target
IDP92074 
PDB Id
5BXI (NCBI MMDB) 
Authors
G.Minasov,J.Ruan,H.Ngo,L.Shuvalova,I.Dubrovska,K.Flores,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
George Minasov 
Responsible lab
Northwestern University 
Deposition Date
Jun 09, 2015 
Release Date
Jun 24, 2015 

Annotation

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Ligands

Ligand code Name Ligand type
PEG crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=236.81Å, b=73.40Å, c=122.67Å
α=90.00, β=116.83, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.98-1.70Å (1.74-1.70Å)  
Rall(%)
15.6 
Rwork(%)
15.4 (20.8) 
Rfree(%)
19.2 (24.6) 
Num. observed reflections
202643 (14701) 
Num. Rfree reflections
10132 (741) 
Completeness(%)
98.2 (97.0) 

Model parameters

Num Atoms
15288  
Num Waters
1854  
Num Hetatoms
1957  
Model mean isotropic B factor
33.440Å2  
RMSD bond length
0.010Å  
RMSD bond angle
1.398°  
Filename uploaded
5BXI.pdb (uploaded on Aug 05, 2015 1:29 PM)  
Inserted
Aug 05, 2015