Structure of IDP90773

Crystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio cholerae

Edit deposit information
CSGID target
IDP90773 
PDB Id
5DT9 (NCBI MMDB
Authors
P.J.Stogios,T.Skarina,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Sep 17, 2015 
Release Date
Sep 30, 2015 

Annotation

Ligands

Ligand code Name Ligand type
SO4 crystallization
CL CHLORIDE ION crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological

Structure information

Unit cell parameters

Space Group
P 43 21 2  
Unit Cell

a=145.78Å, b=145.78Å, c=62.03Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
25.00-2.66Å (2.66-2.75Å)  
Rall(%)
19.5 
Rwork(%)
19.3 (27.7) 
Rfree(%)
24.0 (34.5) 
Num. observed reflections
18589 (1808) 
Num. Rfree reflections
938 (92) 
Completeness(%)
91.4 (0.0) 

Model parameters

Num Atoms
2936  
Num Waters
154  
Num Hetatoms
252  
Model mean isotropic B factor
56.800Å2  
RMSD bond length
0.003Å  
RMSD bond angle
1.385°  
RMSD dihedral angle
13.404°
 
Filename uploaded
5DT9.pdb (uploaded on Sep 30, 2015 9:40 AM)  
Inserted
Sep 22, 2015