Structure of IDP95403

Crystal structure of an aminoglycoside acetyltransferase HMB0005 from an uncultured soil metagenomic sample with unknown active site density modeled as polyethylene glycol

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CSGID target
IDP95403 
PDB Id
5HMN (NCBI MMDB) 
Authors
'Z.Xu,P.J.Stogios,Z.Wawrzak,T.Skarina,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 16, 2016 
Release Date
Feb 17, 2016 

Annotation

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Ligands

Ligand code Name Ligand type
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological
PG4 crystallization

Structure information

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Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=58.27Å, b=62.76Å, c=253.61Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
19.87-2.02Å (2.07-2.02Å)  
Rall(%)
19.2 
Rwork(%)
19.1 (23.8) 
Rfree(%)
22.1 (29.0) 
Num. observed reflections
63999 (4156) 
Num. Rfree reflections
2060 (132) 
Completeness(%)
99.6 (98.0) 

Model parameters

Num Atoms
7277  
Num Waters
744  
Num Hetatoms
1130  
Model mean isotropic B factor
59.290Å2  
RMSD bond length
0.016Å  
RMSD bond angle
1.305°  
RMSD dihedral angle
18.037°
 
Filename uploaded
5hmn.pdb (uploaded on Mar 30, 2016 9:28 AM)  
Inserted
Jan 16, 2016