Structure of IDP95403

Crystal structure of an aminoglycoside acetyltransferase HMB0005 from an uncultured soil metagenomic sample with unknown active site density modeled as polyethylene glycol

Edit deposit information
CSGID target
IDP95403 
PDB Id
5HMN (NCBI MMDB
Authors
Z.Xu,P.J.Stogios,Z.Wawrzak,T.Skarina,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 16, 2016 
Release Date
Feb 17, 2016 

Annotation

Ligands

Ligand code Name Ligand type
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological
PG4 crystallization

Structure information

Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=58.27Å, b=62.76Å, c=253.61Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
19.87-2.02Å (2.07-2.02Å)  
Rall(%)
19.2 
Rwork(%)
19.1 (23.8) 
Rfree(%)
22.1 (29.0) 
Num. observed reflections
63999 (4156) 
Num. Rfree reflections
2060 (132) 
Completeness(%)
99.6 (98.0) 

Model parameters

Num Atoms
7277  
Num Waters
744  
Num Hetatoms
1130  
Model mean isotropic B factor
59.290Å2  
RMSD bond length
0.016Å  
RMSD bond angle
1.305°  
RMSD dihedral angle
18.037°
 
Filename uploaded
5hmn.pdb (uploaded on Mar 30, 2016 9:28 AM)  
Inserted
Jan 16, 2016