Structure of IDP91871

Crystal structure of vancomycin resistance D,D-pentapeptidase VanY E175A mutant from VanB-type resistance cassette in complex with Zn(II)

Edit deposit information
CSGID target
IDP91871 
PDB Id
5HNM (NCBI MMDB
Authors
P.J.Stogios,J.Chun,Z.Wawrzak,E.Evdokimova,R.Di Leo,V.Yim,P.Courvalin,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 18, 2016 
Release Date
Feb 10, 2016 

Annotation

Ligands

Ligand code Name Ligand type
SO4 crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological

Structure information

Unit cell parameters

Space Group
P 1  
Unit Cell

a=55.71Å, b=77.32Å, c=85.86Å
α=101.34, β=108.13, γ=90.06 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
18.88-2.30Å (2.33-2.30Å)  
Rall(%)
22.2 
Rwork(%)
21.9 (31.2) 
Rfree(%)
27.5 (34.5) 
Num. observed reflections
61141 (3631) 
Num. Rfree reflections
3081 (195) 
Completeness(%)
95.8 (95.0) 

Model parameters

Num Atoms
8696  
Num Waters
531  
Num Hetatoms
565  
Model mean isotropic B factor
49.820Å2  
RMSD bond length
0.013Å  
RMSD bond angle
0.652°  
RMSD dihedral angle
11.883°
 
Filename uploaded
5hnm.pdb (uploaded on Mar 24, 2016 12:41 PM)  
Inserted
Jan 18, 2016