Structure of IDP90513

High resolution structure of 3-hydroxydecanoyl-(acyl carrier protein) dehydratase from Yersinia pestis at 1.35 A

Edit deposit information
CSGID target
IDP90513 
PDB Id
5HD6 (NCBI MMDB
Authors
C.Chang,N.Maltseva,Y.Kim,R.Mulligan,K.Kwon,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Natalia Maltseva 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 04, 2016 
Release Date
Jan 20, 2016 

Annotation

Ligands

Ligand code Name Ligand type
GOL crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

Unit cell parameters

Space Group
P 1  
Unit Cell

a=42.66Å, b=50.82Å, c=138.78Å
α=90.02, β=90.02, γ=90.10 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
26.92-1.35Å (1.37-1.35Å)  
Rall(%)
13.8 
Rwork(%)
13.6 (2008.0) 
Rfree(%)
17.0 (2581.0) 
Num. observed reflections
263480 (9432) 
Num. Rfree reflections
12857 (473) 
Completeness(%)
86.3 (55.0) 

Model parameters

Num Atoms
10398  
Num Waters
1634  
Num Hetatoms
2378  
Model mean isotropic B factor
14.700Å2  
RMSD bond length
0.007Å  
RMSD bond angle
0.877°  
RMSD dihedral angle
19.619°
 
Filename uploaded
D_1000216593_model-annotate_P1.pdb (uploaded on Jan 29, 2016 12:06 PM)  
Inserted
Jan 29, 2016