Structure of IDP91357

The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus

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CSGID target
IDP91357 
PDB Id
5IZN (NCBI MMDB) 
Authors
'K.Tan,M.Zhou,K.Kwon,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Kemin Tan 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 25, 2016 
Release Date
Apr 06, 2016 

Annotation

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Ligands

Ligand code Name Ligand type
PO4 crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=128.45Å, b=58.80Å, c=122.00Å
α=90.00, β=90.51, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
34.22-2.35Å (0.00-0.00Å)  
Rall(%)
20.7 
Rwork(%)
20.5 (0.0) 
Rfree(%)
25.2 (0.0) 
Num. observed reflections
35167 (0) 
Num. Rfree reflections
1751 (0) 
Completeness(%)
87.6 (0.0) 

Model parameters

Num Atoms
5732  
Num Waters
88  
Num Hetatoms
128  
Model mean isotropic B factor
55.680Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.447°  
RMSD dihedral angle
11.73°
 
Filename uploaded
IDP91357.pdb (uploaded on Mar 25, 2016 5:48 PM)  
Inserted
Mar 25, 2016