Structure of IDP91357

The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus

Edit deposit information
CSGID target
IDP91357 
PDB Id
5IZN (NCBI MMDB
Authors
K.Tan,M.Zhou,K.Kwon,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Kemin Tan 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 25, 2016 
Release Date
Apr 06, 2016 

Annotation

Ligands

Ligand code Name Ligand type
PO4 PHOSPHATE ION crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=128.45Å, b=58.80Å, c=122.00Å
α=90.00, β=90.51, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
34.22-2.35Å (0.00-0.00Å)  
Rall(%)
20.7 
Rwork(%)
20.5 (0.0) 
Rfree(%)
25.2 (0.0) 
Num. observed reflections
35167 (0) 
Num. Rfree reflections
1751 (0) 
Completeness(%)
87.6 (0.0) 

Model parameters

Num Atoms
5732  
Num Waters
88  
Num Hetatoms
128  
Model mean isotropic B factor
55.680Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.447°  
RMSD dihedral angle
11.73°
 
Filename uploaded
IDP91357.pdb (uploaded on Mar 25, 2016 5:48 PM)  
Inserted
Mar 25, 2016