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Structure of IDP01531

Crystal structure of probable sor operon regulator from Shigella flexneri

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CSGID target
IDP01531 
PDB Id
3EFB (NCBI MMDB) 
Authors
'Y.Kim,E.Evdokimova,M.Kudritska,A.Savchenko,A.Edwards,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Sep 08, 2008 
Release Date
Sep 23, 2008 

Annotation

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Description
Sor operon regulator SorC is transcriptional regulator which controls the expression of proteins involved in the metabolism of L-sorbose. The structure includes residues 51 – 315 without the DNA binding domain (DBD) and superposes well with the effector binding domin of central glycolytic gene regulator (GGR) (2okg) from B. subtilis including the glyceraldehyde 3 phosphate binding pocket for GGR. 
Functional assignment
 

Ligands

Ligand code Name Ligand type
ACY
MSE modified residue

Structure information

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Unit cell parameters

Space Group
P 21 21 2  
Unit Cell

a=69.54Å, b=238.46Å, c=53.76Å
α=90.00, β=90.00, γ=90.00 
Solvent content
34.86  
Matthews coefficient
1.89  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
33.38-2.00Å (0.00-0.00Å)  
Rall(%)
20.3 
Rwork(%)
20.0 (0.0) 
Rfree(%)
24.9 (0.0) 
Num. observed reflections
64164 (0) 
Num. Rfree reflections
3246 (0) 
Completeness(%)
99.4 (0.0) 

Model parameters

Num Atoms
8130  
Num Waters
499  
Num Hetatoms
0  
Model mean isotropic B factor
47.179Å2  
RMSD bond length
0.000Å  
RMSD bond angle
0.000°  
Filename uploaded
3efb.pdb (uploaded on Oct 28, 2008 5:05 PM)  
Inserted
Oct 28, 2008