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Structure of IDP01531

Crystal structure of probable sor operon regulator from Shigella flexneri

Edit deposit information
CSGID target
IDP01531 
PDB Id
3EFB (NCBI MMDB
Authors
Y.Kim,E.Evdokimova,M.Kudritska,A.Savchenko,A.Edwards,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Sep 08, 2008 
Release Date
Sep 23, 2008 

Annotation

Description
Sor operon regulator SorC is transcriptional regulator which controls the expression of proteins involved in the metabolism of L-sorbose. The structure includes residues 51 – 315 without the DNA binding domain (DBD) and superposes well with the effector binding domin of central glycolytic gene regulator (GGR) (2okg) from B. subtilis including the glyceraldehyde 3 phosphate binding pocket for GGR. 
Functional assignment
 

Ligands

Ligand code Name Ligand type
ACY
MSE modified residue

Structure information

Unit cell parameters

Space Group
P 21 21 2  
Unit Cell

a=69.54Å, b=238.46Å, c=53.76Å
α=90.00, β=90.00, γ=90.00 
Solvent content
34.86  
Matthews coefficient
1.89  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
33.38-2.00Å (0.00-0.00Å)  
Rall(%)
20.3 
Rwork(%)
20.0 (0.0) 
Rfree(%)
24.9 (0.0) 
Num. observed reflections
64164 (0) 
Num. Rfree reflections
3246 (0) 
Completeness(%)
99.4 (0.0) 

Model parameters

Num Atoms
8130  
Num Waters
499  
Num Hetatoms
0  
Model mean isotropic B factor
47.179Å2  
RMSD bond length
0.000Å  
RMSD bond angle
0.000°  
Filename uploaded
3efb.pdb (uploaded on Oct 28, 2008 5:05 PM)  
Inserted
Oct 28, 2008