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Structure of IDP00692

Crystal structure of a putative pyrimidine-nucleoside phosphorylase from Staphylococcus aureus

Edit deposit information
CSGID target
IDP00692 
PDB Id
3H5Q (NCBI MMDB
Authors
I.A.Shumilin,M.Zimmerman,M.Cymborowski,T.Skarina,O.Onopriyenko,W.F.Anderson,A.Savchenko,W.Minor,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Igor Shumilin 
Responsible lab
University of Virginia 
Deposition Date
Apr 22, 2009 
Release Date
May 26, 2009 

Annotation

Ligands

Ligand code Name Ligand type
SO4
THM thymidine biological
MSE modified residue

Structure information

Unit cell parameters

Space Group
P 1 2 1  
Unit Cell

a=51.59Å, b=40.88Å, c=105.58Å
α=90.00, β=97.19, γ=90.00 
Solvent content
48.54  
Matthews coefficient
2.39  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
50.00-1.94Å (1.99-1.94Å)  
Rall(%)
16.8 
Rwork(%)
16.6 (20.8) 
Rfree(%)
20.4 (27.9) 
Num. observed reflections
32390 (2212) 
Num. Rfree reflections
1619 (93) 
Completeness(%)
98.9 (92.4) 

Model parameters

Num Atoms
3729  
Num Waters
406  
Num Hetatoms
0  
Model mean isotropic B factor
20.090Å2  
RMSD bond length
0.020Å  
RMSD bond angle
1.696°  
Filename uploaded
hkl_refine_46.pdb (uploaded on Apr 22, 2009 3:38 PM)  
Inserted
Apr 22, 2009