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Structure of IDP90564

Crystal structure of transketolase in complex with thiamine diphosphate, ribose-5-phosphate and calcium ion

Edit deposit information
CSGID target
IDP90564 
PDB Id
3M6L (NCBI MMDB
Authors
B.Nocek,M.Makowska-Grzyska,N.Maltseva,A.Joachimiak,W.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 15, 2010 
Release Date
Apr 28, 2010 

Annotation

Ligands

Ligand code Name Ligand type
R5P ribose-5-phosphate biological
GOL
TPP thiamine diphosphate
CA
EDO
PO4 PHOSPHATE ION
MSE modified residue

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=130.92Å, b=71.46Å, c=69.62Å
α=90.00, β=109.48, γ=90.00 
Solvent content
43.58  
Matthews coefficient
2.18  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.00-1.59Å (1.63-1.59Å)  
Rall(%)
16.2 
Rwork(%)
16.0 (30.5) 
Rfree(%)
20.1 (31.6) 
Num. observed reflections
76498 (4137) 
Num. Rfree reflections
3824 (221) 
Completeness(%)
94.3 (69.7) 

Model parameters

Num Atoms
5535  
Num Waters
565  
Num Hetatoms
0  
Model mean isotropic B factor
15.950Å2  
RMSD bond length
0.022Å  
RMSD bond angle
2.170°  
Filename uploaded
TK-4_refmac1_FINAL-0315.pdb (uploaded on Mar 16, 2010 7:25 PM)  
Inserted
Mar 16, 2010