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Structure of IDP90564

Crystal structure of transketolase in complex with thiamine diphosphate, ribose-5-phosphate (pyranose form) and magnesium ion

Edit deposit information
CSGID target
IDP90564 
PDB Id
3M7I (NCBI MMDB
Authors
B.Nocek,M.Makowska-Grzyska,N.Maltseva,W.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 16, 2010 
Release Date
Apr 07, 2010 

Annotation

Ligands

Ligand code Name Ligand type
TPP thiamine diphosphate biological
RP5 ribose-5-phosphate, pyranose form biological
EDO
MG
MSE modified residue

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=130.34Å, b=70.95Å, c=69.19Å
α=90.00, β=109.40, γ=90.00 
Solvent content
42.59  
Matthews coefficient
2.14  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.00-1.75Å (1.80-1.75Å)  
Rall(%)
17.1 
Rwork(%)
16.7 (22.6) 
Rfree(%)
21.1 (26.7) 
Num. observed reflections
57816 (3972) 
Num. Rfree reflections
2890 (176) 
Completeness(%)
96.8 (90.4) 

Model parameters

Num Atoms
5279  
Num Waters
328  
Num Hetatoms
0  
Model mean isotropic B factor
23.720Å2  
RMSD bond length
0.022Å  
RMSD bond angle
1.858°  
Filename uploaded
H2-0316-RIBOSE_DEPOSIT.pdb (uploaded on Mar 16, 2010 7:32 PM)  
Inserted
Mar 16, 2010