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Structure of IDP90564

Crystal structure of transketolase in complex with thiamine diphosphate, ribose-5-phosphate (pyranose form) and magnesium ion

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CSGID target
IDP90564 
PDB Id
3M7I (NCBI MMDB) 
Authors
B.Nocek,M.Makowska-Grzyska,N.Maltseva,W.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 16, 2010 
Release Date
Apr 07, 2010 

Annotation

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Ligands

Ligand code Name Ligand type
TPP thiamine diphosphate biological
RP5 ribose-5-phosphate, pyranose form biological
EDO ethylene diol
MG magnesium
MSE modified residue

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=130.34Å, b=70.95Å, c=69.19Å
α=90.00, β=109.40, γ=90.00 
Solvent content
42.59  
Matthews coefficient
2.14  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.00-1.75Å (1.80-1.75Å)  
Rall(%)
17.1 
Rwork(%)
16.7 (22.6) 
Rfree(%)
21.1 (26.7) 
Num. observed reflections
57816 (3972) 
Num. Rfree reflections
2890 (176) 
Completeness(%)
96.8 (90.4) 

Model parameters

Num Atoms
5279  
Num Waters
328  
Num Hetatoms
0  
Model mean isotropic B factor
23.720Å2  
RMSD bond length
0.022Å  
RMSD bond angle
1.858°  
Filename uploaded
H2-0316-RIBOSE_DEPOSIT.pdb (uploaded on Mar 16, 2010 7:32 PM)  
Inserted
Mar 16, 2010