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Structure of IDP00076

Crystal structure of the yhdH oxidoreductase from Salmonella enterica in complex with NADP

Edit deposit information
CSGID target
IDP00076 
PDB Id
3NX4 (NCBI MMDB
Authors
S.M.Anderson,Z.Wawrzak,S.Peterson,O.Onopriyenko,T.Skarina,W.F.Anderson,A.Savchenko,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Spencer Anderson 
Responsible lab
Northwestern University 
Deposition Date
Jul 12, 2010 
Release Date
Aug 04, 2010 

Annotation

Ligands

Ligand code Name Ligand type
NAP
MSE modified residue

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=103.22Å, b=122.36Å, c=64.91Å
α=90.00, β=121.10, γ=90.00 
Solvent content
51.22  
Matthews coefficient
2.52  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
37.04-1.90Å (37.04-1.90Å)  
Rall(%)
15.6 
Rwork(%)
15.5 (15.6) 
Rfree(%)
19.1 (19.1) 
Num. observed reflections
53571 (54229) 
Num. Rfree reflections
2073 (1994) 
Completeness(%)
95.1 (95.1) 

Model parameters

Num Atoms
4716  
Num Waters
404  
Num Hetatoms
639  
Model mean isotropic B factor
46.070Å2  
RMSD bond length
0.007Å  
RMSD bond angle
1.120°  
RMSD dihedral angle
15.53°
 
Filename uploaded
rcsb060388.pdb (uploaded on Jul 25, 2010 3:47 PM)  
Inserted
Jul 25, 2010