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Structure of IDP04384

Crystal Structure of a pyridoxamine kinase from Yersinia pestis CO92

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CSGID target
IDP04384 
PDB Id
3PZS (NCBI MMDB) 
Authors
J.S.Brunzelle,Z.Wawrzak,M.Kudritska,O.Onopriyenko,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Joseph Brunzelle 
Responsible lab
Northwestern University 
Deposition Date
Dec 14, 2010 
Release Date
Mar 16, 2011 

Annotation

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Ligands

Ligand code Name Ligand type
SO4 sulfate crystallization
NA crystallization
MSE modified residue
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=67.91Å, b=88.10Å, c=102.92Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
28.92-1.89Å (1.94-1.89Å)  
Rall(%)
17.1 
Rwork(%)
17.0 (22.8) 
Rfree(%)
20.1 (27.4) 
Num. observed reflections
52063 (3199) 
Num. Rfree reflections
2639 (178) 
Completeness(%)
0.0 (0.0) 

Model parameters

Num Atoms
4263  
Num Waters
560  
Num Hetatoms
765  
Model mean isotropic B factor
29.710Å2  
RMSD bond length
0.010Å  
RMSD bond angle
1.000°  
RMSD dihedral angle
3.61°
 
RMSD improper torsion angle
2.65°
 
Filename uploaded
refine-coot-1.pdb (uploaded on Dec 14, 2010 4:28 PM)  
Inserted
Dec 14, 2010