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Structure of IDP04384

Crystal Structure of a pyridoxamine kinase from Yersinia pestis CO92

Edit deposit information
CSGID target
IDP04384 
PDB Id
3PZS (NCBI MMDB
Authors
J.S.Brunzelle,Z.Wawrzak,M.Kudritska,O.Onopriyenko,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Joseph Brunzelle 
Responsible lab
Northwestern University 
Deposition Date
Dec 14, 2010 
Release Date
Mar 16, 2011 

Annotation

Ligands

Ligand code Name Ligand type
SO4 crystallization
NA Sodium ion crystallization
MSE modified residue
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=67.91Å, b=88.10Å, c=102.92Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
28.92-1.89Å (1.94-1.89Å)  
Rall(%)
17.1 
Rwork(%)
17.0 (22.8) 
Rfree(%)
20.1 (27.4) 
Num. observed reflections
52063 (3199) 
Num. Rfree reflections
2639 (178) 
Completeness(%)
0.0 (0.0) 

Model parameters

Num Atoms
4263  
Num Waters
560  
Num Hetatoms
765  
Model mean isotropic B factor
29.710Å2  
RMSD bond length
0.010Å  
RMSD bond angle
1.000°  
RMSD dihedral angle
3.61°
 
RMSD improper torsion angle
2.65°
 
Filename uploaded
refine-coot-1.pdb (uploaded on Dec 14, 2010 4:28 PM)  
Inserted
Dec 14, 2010