Structure of IDP95570

Crystal structure of YPT31, a Rab family GTPase from Candida albicans, in complex with GDP and Zn(II)

Edit deposit information
CSGID target
IDP95570 
PDB Id
5UB8 (NCBI MMDB
Authors
P.J.Stogios,T.Skarina,R.Di Leo,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Dec 20, 2016 
Release Date
Jan 11, 2017 

Annotation

Ligands

Ligand code Name Ligand type
GDP biological
ZN crystallization

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=118.30Å, b=43.39Å, c=41.66Å
α=90.00, β=89.05, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.57-2.35Å (2.49-2.35Å)  
Rall(%)
18.9 
Rwork(%)
18.5 (25.3) 
Rfree(%)
22.6 (26.7) 
Num. observed reflections
9179 (1112) 
Num. Rfree reflections
919 (125) 
Completeness(%)
92.4 (83.0) 

Model parameters

Num Atoms
1411  
Num Waters
127  
Num Hetatoms
163  
Model mean isotropic B factor
37.140Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.586°  
RMSD dihedral angle
22.81°
 
Filename uploaded
5ub8.pdb (uploaded on Jan 11, 2017 8:39 AM)  
Inserted
Dec 20, 2016