Coverage of Infectious Pathogens*

Stages of targets according to unified status codes

Classification Genus Species # of structures in PDB at CSGID start # of structures in PDB # of CSGID structures CSGID as % of all entries CSGID as % of new entries
* "Number of Structures in PDB at CSGID start" denotes number of protein structures for a given species deposited in the PDB before October 1, 2007. "Current number of structures in PDB" denotes the number of structures deposited in the PDB as of November 23, 2017. For both PDB and CSGID only the structures released as of November 23, 2017 are taken into account (thus structures that have been deposited but are not yet released by the PDB are omitted). Assignment of species for PDB structures is based on taxonomy id and scientific name provided by depositors; the assignment may be imprecise in cases where only scientific name and no taxonomy id was given.
Actinobacteria (class) Bifidobacterium Bifidobacterium longum 8 33 1 3.0 4.0
Bacilli Bacillus Bacillus anthracis 64 269 82 30.5 40.0
Bacilli Enterococcus Enterococcus faecalis 93 192 6 3.1 6.1
Bacilli Enterococcus Enterococcus faecium 14 28 8 28.6 57.1
Bacilli Enterococcus Enterococcus gallinarum 0 6 4 66.7 66.7
Bacilli Listeria Listeria monocytogenes 37 155 35 22.6 29.7
Bacilli Staphylococcus Staphylococcus aureus 393 996 31 3.1 5.1
Bacilli Staphylococcus Staphylococcus epidermidis 8 53 0 0.0 0.0
Bacilli Staphylococcus Staphylococcus haemolyticus 1 6 2 33.3 40.0
Bacilli Streptococcus Streptococcus agalactiae 12 47 0 0.0 0.0
Bacilli Streptococcus Streptococcus pneumoniae 130 383 17 4.4 6.7
Bacteroidia Bacteroides Bacteroides thetaiotaomicron 25 154 0 0.0 0.0
Betaproteobacteria Neisseria Neisseria meningitidis 59 182 3 1.6 2.4
Chlamydiae Chlamydia Chlamydia trachomatis 6 36 2 5.6 6.7
Clostridia Clostridium Clostridium difficile 6 93 13 14.0 14.9
Clostridia Clostridium Clostridium perfringens 31 150 8 5.3 6.7
Coccidia Cryptosporidium Cryptosporidium parvum 10 32 7 21.9 31.8
Coccodia Toxoplasma Toxoplasma gondii 39 104 14 13.5 21.5
Epsilonproteobacteria Campylobacter Campylobacter jejuni 17 131 32 24.4 28.1
Epsilonproteobacteria Helicobacter Helicobacter pylori 91 277 2 0.7 1.1
Gammaproteobacteria Acinetobacter Acinetobacter baumannii 4 83 10 12.0 12.7
Gammaproteobacteria Acinetobacter Acinetobacter haemolyticus 0 2 2 100.0 100.0
Gammaproteobacteria Coxiella Coxiella burnetii 0 26 6 23.1 23.1
Gammaproteobacteria Escherichia Escherichia coli 3426 5360 16 0.3 0.8
Gammaproteobacteria Francisella Francisella tularensis 3 67 36 53.7 56.2
Gammaproteobacteria Legionella Legionella pneumophila 9 98 4 4.1 4.5
Gammaproteobacteria Pseudomonas Pseudomonas aeruginosa 357 907 6 0.7 1.1
Gammaproteobacteria Pseudomonas Pseudomonas fluorescens 63 133 1 0.8 1.4
Gammaproteobacteria Salmonella Salmonella enterica 330 674 31 4.6 9.0
Gammaproteobacteria Shigella Shigella flexneri 23 99 4 4.0 5.3
Gammaproteobacteria Vibrio Vibrio cholerae 84 333 49 14.7 19.7
Gammaproteobacteria Vibrio Vibrio parahaemolyticus 17 54 1 1.9 2.7
Gammaproteobacteria Vibrio Vibrio vulnificus 5 32 7 21.9 25.9
Gammaproteobacteria Yersinia Yersinia enterocolitica 29 56 3 5.4 11.1
Gammaproteobacteria Yersinia Yersinia pestis 19 119 49 41.2 49.0
Mammalia Homo Homo sapiens 9405 20113 1 0.0 0.0
Spirochaetia Leptospira Leptospira interrogans 11 25 1 4.0 7.1
Viruses Ebolavirus Zaire ebolavirus 2 15 1 6.7 7.7
Viruses Flavivirus Dengue virus 27 77 3 3.9 6.0
Viruses Flavivirus Japanese encephalitis virus 2 7 1 14.3 20.0
Viruses Flavivirus West Nile virus 13 24 2 8.3 18.2
Viruses Influenzavirus A Influenza A virus 124 540 2 0.4 0.5
Viruses Orthopoxvirus Cowpox virus 3 3 0 0.0 0.0
Viruses Orthopoxvirus Ectromelia virus 2 7 1 14.3 20.0
Viruses Orthopoxvirus Monkeypox virus 0 1 1 100.0 100.0