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Structure of IDP01964

X-ray crystal structure of Putative Bacterioferritin from Campylobacter jejuni

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CSGID target
IDP01964 
PDB Id
3KWO (NCBI MMDB) 
Authors
Y.Kim,M.Gu,L.Papazisi,W.Anderson,A.Joachimiak 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 01, 2009 
Release Date
Jan 19, 2010 

Annotation

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Description
This protein is similar to bacterioferritins and members of DPS family which form a dodecameric sphere. Ferritin is a non-heam iron storage protein contains mineral core of hydrated ferric oxide on the shell surface inside of the sphere. This structure, however, doesn’t contain iron. 
Functional assignment
 

Ligands

Ligand code Name Ligand type
ACY
GOL glycerol
ZN zinc
BU1
MSE modified residue

Structure information

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Unit cell parameters

Space Group
H 3  
Unit Cell

a=91.72Å, b=91.72Å, c=202.29Å
α=90.00, β=90.00, γ=120.00 
Solvent content
47.42  
Matthews coefficient
2.34  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
28.78-1.99Å (2.06-1.99Å)  
Rall(%)
14.6 
Rwork(%)
14.4 (17.6) 
Rfree(%)
19.7 (22.9) 
Num. observed reflections
45341 (4186) 
Num. Rfree reflections
2280 (216) 
Completeness(%)
98.4 (96.0) 

Model parameters

Num Atoms
5549  
Num Waters
573  
Num Hetatoms
0  
Model mean isotropic B factor
25.670Å2  
RMSD bond length
0.013Å  
RMSD bond angle
1.377°  
RMSD dihedral angle
16.93°
 
Filename uploaded
dep1w.pdb (uploaded on Dec 01, 2009 6:14 PM)  
Inserted
Dec 01, 2009