Structure of IDP09018

Crystal Structure of a Tripartite Toxin Component VCA0883 from Vibrio cholerae

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CSGID target
IDP09018 
PDB Id
6DFP (NCBI MMDB) 
Authors
'Y.Kim,N.Maltseva,M.Endres,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
May 15, 2018 
Release Date
May 23, 2018 

Annotation

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Ligands

Ligand code Name Ligand type
MSE modified residue

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=63.56Å, b=37.49Å, c=73.34Å
α=90.00, β=91.30, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.37-1.50Å (1.53-1.50Å)  
Rall(%)
16.1 
Rwork(%)
15.9 (22.1) 
Rfree(%)
19.5 (32.4) 
Num. observed reflections
56722 (1992) 
Num. Rfree reflections
2847 (91) 
Completeness(%)
96.6 (69.0) 

Model parameters

Num Atoms
2959  
Num Waters
355  
Num Hetatoms
355  
Model mean isotropic B factor
31.190Å2  
RMSD bond length
0.006Å  
RMSD bond angle
0.699°  
RMSD dihedral angle
17.7°
 
Filename uploaded
dep.pdb (uploaded on May 17, 2018 1:03 PM)  
Inserted
May 17, 2018