Structure of IDP55101

Crystal Structure of the New Deli Metallo Beta Lactamase Variant 5 from Klebsiella pneumoniae

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CSGID target
IDP55101 
PDB Id
6MGY (NCBI MMDB) 
Authors
'Y.Kim,C.Tesar,R.Jedrzejczak,G.Babnigg,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Sep 16, 2018 
Release Date
Oct 03, 2018 

Annotation

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Ligands

Ligand code Name Ligand type
ZN zinc biological
K biological
GOL glycerol crystallization

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=46.87Å, b=69.62Å, c=68.79Å
α=92.26, β=103.36, γ=88.52 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
30.56-1.60Å (1.62-1.60Å)  
Rall(%)
15.5 
Rwork(%)
15.4 (22.6) 
Rfree(%)
18.9 (25.7) 
Num. observed reflections
107766 (1926) 
Num. Rfree reflections
5140 (93) 
Completeness(%)
92.6 (52.0) 

Model parameters

Num Atoms
7036  
Num Waters
640  
Num Hetatoms
656  
Model mean isotropic B factor
25.250Å2  
RMSD bond length
0.009Å  
RMSD bond angle
0.969°  
RMSD dihedral angle
16.15°
 
Filename uploaded
dep5.pdb (uploaded on Dec 06, 2018 11:53 AM)  
Inserted
Dec 06, 2018