Structure of IDP50842

The crystal structure of an ABC transporter periplasmic binding protein YdcS from Escherichia coli BW25113

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CSGID target
IDP50842 
PDB Id
6NLP (NCBI MMDB) 
Authors
'K.Tan,T.Skarina,R.Di Leo,A.Savchenko,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Kemin Tan 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 08, 2019 
Release Date
Jan 23, 2019 

Annotation

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Ligands

Ligand code Name Ligand type
MSE modified residue
IMD crystallization
EDO ethylene diol crystallization

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=161.90Å, b=42.90Å, c=122.77Å
α=90.00, β=121.96, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.91-1.90Å (0.00-0.00Å)  
Rall(%)
18.3 
Rwork(%)
18.1 (0.0) 
Rfree(%)
22.7 (0.0) 
Num. observed reflections
54980 (0) 
Num. Rfree reflections
2699 (0) 
Completeness(%)
91.8 (0.0) 

Model parameters

Num Atoms
5546  
Num Waters
393  
Num Hetatoms
555  
Model mean isotropic B factor
23.230Å2  
RMSD bond length
0.009Å  
RMSD bond angle
0.926°  
RMSD dihedral angle
6.594°
 
Filename uploaded
IDP50842.pdb (uploaded on Jan 08, 2019 5:42 PM)  
Inserted
Jan 08, 2019