Structure of IDP97181

Crystal Structure of the Beta Lactamase Class D YbXI from Nostoc

Edit deposit information
CSGID target
IDP97181 
PDB Id
6NHS (NCBI MMDB
Authors
'Y.Kim,C.Tesar,M.Endres,G.Babnigg,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 23, 2018 
Release Date
Jan 16, 2019 

Annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
CL crystallization
FMT crystallization
EDO ETHYLENE GLYCOL crystallization

Structure information

Unit cell parameters

Space Group
P 62 2 2  
Unit Cell

a=116.50Å, b=116.50Å, c=74.70Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
38.13-2.00Å (2.10-2.00Å)  
Rall(%)
16.5 
Rwork(%)
16.3 (19.0) 
Rfree(%)
20.1 (21.0) 
Num. observed reflections
21654 (2846) 
Num. Rfree reflections
1037 (129) 
Completeness(%)
99.3 (98.0) 

Model parameters

Num Atoms
1978  
Num Waters
124  
Num Hetatoms
182  
Model mean isotropic B factor
36.920Å2  
RMSD bond length
0.005Å  
RMSD bond angle
0.670°  
RMSD dihedral angle
15.27°
 
Filename uploaded
dep.pdb (uploaded on Jan 23, 2019 11:27 AM)  
Inserted
Jan 23, 2019