Structure of IDP97205

Crystal Structure of the Beta Lactamase Class D YbxI from Agrobacterium fabrum

Edit deposit information
CSGID target
IDP97205 
PDB Id
6NHU (NCBI MMDB
Authors
'Y.Kim,L.Welk,M.Endres,G.Babnigg,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 23, 2018 
Release Date
Jan 16, 2019 

Annotation

Ligands

Ligand code Name Ligand type
GOL glycerol crystallization
PO4 crystallization
EDO crystallization

Structure information

Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=49.88Å, b=165.96Å, c=75.43Å
α=90.00, β=90.02, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
44.61-2.28Å (2.32-2.28Å)  
Rall(%)
18.9 
Rwork(%)
18.7 (26.0) 
Rfree(%)
22.3 (28.0) 
Num. observed reflections
56557 (2184) 
Num. Rfree reflections
2805 (91) 
Completeness(%)
96.8 (76.0) 

Model parameters

Num Atoms
7605  
Num Waters
114  
Num Hetatoms
146  
Model mean isotropic B factor
46.050Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.573°  
RMSD dihedral angle
18.15°
 
Filename uploaded
dep.pdb (uploaded on Jan 23, 2019 12:11 PM)  
Inserted
Jan 23, 2019