Structure of IDP97205

Crystal Structure of the Beta Lactamase Class D YbxI from Agrobacterium fabrum

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CSGID target
IDP97205 
PDB Id
6NHU (NCBI MMDB) 
Authors
'Y.Kim,L.Welk,M.Endres,G.Babnigg,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 23, 2018 
Release Date
Jan 16, 2019 

Annotation

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Ligands

Ligand code Name Ligand type
GOL glycerol crystallization
PO4 crystallization
EDO ethylene diol crystallization

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=49.88Å, b=165.96Å, c=75.43Å
α=90.00, β=90.02, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
44.61-2.28Å (2.32-2.28Å)  
Rall(%)
18.9 
Rwork(%)
18.7 (26.0) 
Rfree(%)
22.3 (28.0) 
Num. observed reflections
56557 (2184) 
Num. Rfree reflections
2805 (91) 
Completeness(%)
96.8 (76.0) 

Model parameters

Num Atoms
7605  
Num Waters
114  
Num Hetatoms
146  
Model mean isotropic B factor
46.050Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.573°  
RMSD dihedral angle
18.15°
 
Filename uploaded
dep.pdb (uploaded on Jan 23, 2019 12:11 PM)  
Inserted
Jan 23, 2019