Structure of IDP97241

Crystal Structure of the Beta Lactamase Class D YbxI from Burkholderia thailandensis

Edit deposit information
CSGID target
IDP97241 
PDB Id
6NI0 (NCBI MMDB
Authors
'Y.Kim,R.Wu,R.Endres,G.Babnigg,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 25, 2018 
Release Date
Jan 16, 2019 

Annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
CL crystallization
SO4 crystallization

Structure information

Unit cell parameters

Space Group
P 41 21 2  
Unit Cell

a=43.20Å, b=43.20Å, c=256.90Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
42.61-2.30Å (2.53-2.30Å)  
Rall(%)
21.3 
Rwork(%)
21.1 (26.0) 
Rfree(%)
24.8 (34.0) 
Num. observed reflections
12253 (2739) 
Num. Rfree reflections
608 (148) 
Completeness(%)
99.0 (96.0) 

Model parameters

Num Atoms
1938  
Num Waters
43  
Num Hetatoms
64  
Model mean isotropic B factor
38.830Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.484°  
RMSD dihedral angle
24°
 
Filename uploaded
dep.pdb (uploaded on Jan 23, 2019 12:47 PM)  
Inserted
Jan 23, 2019