Structure of IDP96365

Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Escherichia coli

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CSGID target
IDP96365 
PDB Id
6VOP (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 31, 2020 
Release Date
Feb 19, 2020 

Annotation

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Ligands

Ligand code Name Ligand type

Structure information

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Unit cell parameters

Space Group
F 4 3 2  
Unit Cell

a=174.80Å, b=174.80Å, c=174.80Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.48-2.65Å (2.86-2.65Å)  
Rall(%)
19.1 
Rwork(%)
18.9 (30.5) 
Rfree(%)
23.9 (36.2) 
Num. observed reflections
7665 (2322) 
Num. Rfree reflections
388 (123) 
Completeness(%)
99.5 (97.0) 

Model parameters

Num Atoms
1585  
Num Waters
55  
Num Hetatoms
55  
Model mean isotropic B factor
43.630Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.471°  
RMSD dihedral angle
23.453°
 
Filename uploaded
6vop.pdb (uploaded on Feb 19, 2020 9:39 AM)  
Inserted
Feb 19, 2020