Structure of IDP96399

Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella pneumoniae

(tree view)
Edit deposit information
CSGID target
IDP96399 
PDB Id
6VOQ (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., McChesney, C., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 31, 2020 
Release Date
Feb 19, 2020 

Annotation

Add an annotation

Ligands

Ligand code Name Ligand type
ZN zinc biological
CL chloride crystallization

Structure information

View structure information | Edit structure information (upload a PDB file)

Unit cell parameters

Space Group
I 4 2 2  
Unit Cell

a=76.44Å, b=76.44Å, c=181.68Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.58-2.49Å (2.74-2.49Å)  
Rall(%)
15.9 
Rwork(%)
15.6 (30.5) 
Rfree(%)
21.1 (36.2) 
Num. observed reflections
10352 (2256) 
Num. Rfree reflections
517 (118) 
Completeness(%)
99.6 (98.0) 

Model parameters

Num Atoms
1595  
Num Waters
151  
Num Hetatoms
159  
Model mean isotropic B factor
40.270Å2  
RMSD bond length
0.006Å  
RMSD bond angle
0.791°  
RMSD dihedral angle
3.14°
 
Filename uploaded
6voq.pdb (uploaded on Feb 19, 2020 9:43 AM)  
Inserted
Feb 19, 2020