Structure of IDP52015

The 1.9 A Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with a Citrate

Edit deposit information
CSGID target
IDP52015 
PDB Id
6W01 (NCBI MMDB
Authors
Kim, Y., Jedrzejczak, R., Maltseva, N., Endres, M., Godzik, A., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 28, 2020 
Release Date
Mar 11, 2020 

Annotation

Ligands

Ligand code Name Ligand type
CIT crystallization
EDO ethylene diol crystallization
PEG crystallization

Structure information

Unit cell parameters

Space Group
P 63  
Unit Cell

a=150.78Å, b=150.78Å, c=111.68Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
44.87-1.90Å (1.93-1.90Å)  
Rall(%)
16.2 
Rwork(%)
16.1 (28.7) 
Rfree(%)
18.5 (30.9) 
Num. observed reflections
116790 (3390) 
Num. Rfree reflections
5757 (148) 
Completeness(%)
98.7 (91.0) 

Model parameters

Num Atoms
5607  
Num Waters
519  
Num Hetatoms
654  
Model mean isotropic B factor
41.030Å2  
RMSD bond length
0.011Å  
RMSD bond angle
0.982°  
RMSD dihedral angle
14.7°
 
Filename uploaded
NSP15-CIT_refine_013.pdb (uploaded on Mar 16, 2020 5:50 PM)  
Inserted
Mar 16, 2020