Structure of CPX_52010_52016

Crystal Structure of Nsp16-Nsp10 from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-Adenosylmethionine.

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CSGID target
CPX_52010_52016 
PDB Id
6WVN (NCBI MMDB) 
Authors
Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
George Minasov 
Responsible lab
Northwestern University 
Deposition Date
May 05, 2020 
Release Date
May 13, 2020 

Annotation

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Ligands

Ligand code Name Ligand type
CL chloride crystallization
SAM s-adenosylmethionine biological
GTA p1-7-methylguanosine-p3-adenosine-5',5'-triphosphate biological
MGP 7-methyl-guanosine-5'-triphosphate biological
ADE adenine biological
SO4 sulfate crystallization
ZN zinc biological

Structure information

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Unit cell parameters

Space Group
P 31 2 1  
Unit Cell

a=169.37Å, b=169.37Å, c=52.08Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.35-2.00Å (2.05-2.00Å)  
Rall(%)
16.3 
Rwork(%)
16.2 (24.9) 
Rfree(%)
17.8 (25.1) 
Num. observed reflections
57854 (4221) 
Num. Rfree reflections
2892 (185) 
Completeness(%)
99.8 (100.0) 

Model parameters

Num Atoms
3366  
Num Waters
324  
Num Hetatoms
540  
Model mean isotropic B factor
46.880Å2  
RMSD bond length
0.004Å  
RMSD bond angle
1.194°  
Filename uploaded
6wvn.pdb (uploaded on May 30, 2020 11:16 AM)  
Inserted
May 30, 2020