Structure of IDP52015

Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the Product Nucleotide GpU

Edit deposit information
CSGID target
IDP52015 
PDB Id
6X1B (NCBI MMDB
Authors
Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Chang, C., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases  
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
May 18, 2020 
Release Date
May 27, 2020 

Annotation

Ligands

Ligand code Name Ligand type
G unknown biological
U unknown biological
EDO crystallization
PO4 crystallization

Structure information

Unit cell parameters

Space Group
P 63  
Unit Cell

a=150.88Å, b=150.88Å, c=111.73Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
49.39-1.97Å (2.00-1.97Å)  
Rall(%)
16.5 
Rwork(%)
15.7 (27.4) 
Rfree(%)
18.5 (30.3) 
Num. observed reflections
106742 (4943) 
Num. Rfree reflections
5273 (271) 
Completeness(%)
99.6 (91.0) 

Model parameters

Num Atoms
5620  
Num Waters
432  
Num Hetatoms
454  
Model mean isotropic B factor
47.790Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.405°  
RMSD dihedral angle
17.74°
 
Filename uploaded
NSP15-GpU_dep.pdb (uploaded on Jul 28, 2020 5:48 PM)  
Inserted
Jul 28, 2020