Structure of IDP91570

Crystal structure of the PDZ domain of human GOPC in complex with a peptide of E. coli O157:H7 str. Sakai effector NleG8

Edit deposit information
CSGID target
IDP91570 
PDB Id
6XNJ (NCBI MMDB
Authors
Stogios, P.J., Skarina, T., Popov, G., Chang, C., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jul 03, 2020 
Release Date
 

Annotation

Ligands

Ligand code Name Ligand type

Structure information

Unit cell parameters

Space Group
P 32 2 1  
Unit Cell

a=68.76Å, b=68.76Å, c=59.94Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
34.38-1.85Å (1.99-1.85Å)  
Rall(%)
28.0 
Rwork(%)
27.9 (26.7) 
Rfree(%)
29.1 (30.4) 
Num. observed reflections
15105 (2684) 
Num. Rfree reflections
743 (140) 
Completeness(%)
99.7 (99.0) 

Model parameters

Num Atoms
 
Num Waters
 
Num Hetatoms
 
Model mean isotropic B factor
23.330Å2  
RMSD bond length
0.060Å  
RMSD bond angle
0.816°  
RMSD dihedral angle
2.993°
 
Filename uploaded
HS00579_NleGpep_APSxA_Mar19_2020_refine_12.pdb (uploaded on Jul 31, 2020 8:06 AM)  
Inserted
Jul 31, 2020