Structure of IDP96425

Crystal structure of aminoglycoside resistance enzyme ApmA, apoenzyme

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CSGID target
IDP96425 
PDB Id
7JM0 (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jul 30, 2020 
Release Date
 

Annotation

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Ligands

Ligand code Name Ligand type
SO4 sulfate crystallization

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=68.54Å, b=76.92Å, c=96.57Å
α=90.00, β=102.12, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
25.00-2.08Å (2.13-2.08Å)  
Rall(%)
18.9 
Rwork(%)
18.8 (22.0) 
Rfree(%)
22.2 (27.1) 
Num. observed reflections
60230 (3867) 
Num. Rfree reflections
2065 (138) 
Completeness(%)
98.3 (95.0) 

Model parameters

Num Atoms
6597  
Num Waters
581  
Num Hetatoms
614  
Model mean isotropic B factor
36.020Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.526°  
RMSD dihedral angle
19.71°
 
Filename uploaded
SA2920_paromomycin_WB_Jan14_2019_refine_10.pdb (uploaded on Aug 02, 2020 12:14 PM)  
Inserted
Aug 02, 2020