Structure of IDP96425

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with apramycin

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CSGID target
IDP96425 
PDB Id
7JM2 (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jul 30, 2020 
Release Date
 

Annotation

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Ligands

Ligand code Name Ligand type
AM2 biological
CL chloride crystallization

Structure information

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Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=61.73Å, b=107.54Å, c=138.70Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
38.92-1.85Å (1.90-1.85Å)  
Rall(%)
19.8 
Rwork(%)
19.7 (40.6) 
Rfree(%)
23.6 (39.5) 
Num. observed reflections
78353 (5186) 
Num. Rfree reflections
2021 (137) 
Completeness(%)
96.0 (95.0) 

Model parameters

Num Atoms
6572  
Num Waters
746  
Num Hetatoms
883  
Model mean isotropic B factor
36.360Å2  
RMSD bond length
0.006Å  
RMSD bond angle
0.779°  
RMSD dihedral angle
20.099°
 
Filename uploaded
SA2920_apramycin_APS_Oct20_2017_refine_8.pdb (uploaded on Aug 02, 2020 12:26 PM)  
Inserted
Aug 02, 2020