Structure of IDP52003

Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2

Edit deposit information
CSGID target
IDP52003 
PDB Id
7KAG (NCBI MMDB
Authors
Stogios PJ, Skarina T, Chang C, Kim Y, Di Leo R, Savchenko A, Joachimiak A, Satchell KJF, Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Sep 30, 2020 
Release Date
Oct 14, 2020 

Annotation

Ligands

Ligand code Name Ligand type
EDO crystallization
SO4 crystallization

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=81.83Å, b=147.57Å, c=70.14Å
α=90.00, β=125.90, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
35.78-3.21Å (3.41-3.21Å)  
Rall(%)
21.8 
Rwork(%)
21.4 (32.6) 
Rfree(%)
24.8 (42.5) 
Num. observed reflections
8801 (236) 
Num. Rfree reflections
871 (26) 
Completeness(%)
72.5 (14.0) 

Model parameters

Num Atoms
1750  
Num Waters
22  
Num Hetatoms
79  
Model mean isotropic B factor
53.800Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.512°  
RMSD dihedral angle
16.78°
 
Filename uploaded
7kag.pdb (uploaded on Oct 14, 2020 9:16 AM)  
Inserted
Sep 30, 2020