Structure of IDP97491

Crystal structure of TrmD tRNA (guanine-N1)-methyltransferase from Corynebacterium diphtheriae in complex with SAH

Edit deposit information
CSGID target
IDP97491 
PDB Id
7KFF (NCBI MMDB
Authors
Michalska, K., Tanase, L., Maltseva, N., Kim, Y., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Karolina Michalska 
Responsible lab
Argonne National Laboratory 
Deposition Date
Oct 13, 2020 
Release Date
 

Annotation

Ligands

Ligand code Name Ligand type
MSE selenomethionine modified residue
ACT crystallization
SAH biological

Structure information

Unit cell parameters

Space Group
P 31 2 1  
Unit Cell

a=83.62Å, b=83.62Å, c=79.42Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
28.79-1.35Å (1.38-1.35Å)  
Rall(%)
13.2 
Rwork(%)
13.1 (22.2) 
Rfree(%)
15.4 (27.1) 
Num. observed reflections
72976 (4375) 
Num. Rfree reflections
2181 (131) 
Completeness(%)
99.5 (99.0) 

Model parameters

Num Atoms
3866  
Num Waters
239  
Num Hetatoms
379  
Model mean isotropic B factor
27.030Å2  
RMSD bond length
0.007Å  
RMSD bond angle
1.059°  
Filename uploaded
D_1000252284_model-annotate_P1.pdb (uploaded on Oct 23, 2020 10:54 AM)  
Inserted
Oct 23, 2020