Structure of IDP52003

Crystal structure of the nucleic acid binding domain (NAB) of Nsp3 from SARS-CoV-2

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CSGID target
IDP52003 
PDB Id
7LGO (NCBI MMDB) 
Authors
Stogios PJ, Skarina T, Di Leo R, Savchenko A, Joachimiak A, Satchell KJF, Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 20, 2021 
Release Date
Jan 27, 2021 

Annotation

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Ligands

Ligand code Name Ligand type

Structure information

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Unit cell parameters

Space Group
P 65 2 2  
Unit Cell

a=76.67Å, b=76.67Å, c=204.15Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.91-2.45Å (2.57-2.44Å)  
Rall(%)
26.4 
Rwork(%)
26.1 (36.0) 
Rfree(%)
31.8 (41.8) 
Num. observed reflections
13706 (1262) 
Num. Rfree reflections
689 (73) 
Completeness(%)
81.7 (38.0) 

Model parameters

Num Atoms
1812  
Num Waters
142  
Num Hetatoms
142  
Model mean isotropic B factor
65.620Å2  
RMSD bond length
0.040Å  
RMSD bond angle
0.838°  
RMSD dihedral angle
16.11°
 
Filename uploaded
7lgo.pdb (uploaded on Jan 27, 2021 9:08 AM)  
Inserted
Jan 21, 2021