Structure of IDP52015

Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-3'',5''-Diphosphate

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CSGID target
IDP52015 
PDB Id
7K1O (NCBI MMDB) 
Authors
Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Welk, L., Chang, C., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Sep 07, 2020 
Release Date
Sep 23, 2020 

Annotation

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Ligands

Ligand code Name Ligand type
U53 ethyl 4-(2-cyanoethylsulfanyl)-6-methoxy-quinoline-3-ca rboxylate biological
EDO ethylene diol crystallization

Structure information

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Unit cell parameters

Space Group
C 2 2 21  
Unit Cell

a=87.46Å, b=151.32Å, c=197.52Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
49.68-2.40Å (2.45-2.40Å)  
Rall(%)
20.9 
Rwork(%)
20.7 (34.0) 
Rfree(%)
24.3 (34.9) 
Num. observed reflections
51735 (2043) 
Num. Rfree reflections
2612 (125) 
Completeness(%)
95.6 (72.0) 

Model parameters

Num Atoms
8327  
Num Waters
47  
Num Hetatoms
59  
Model mean isotropic B factor
74.940Å2  
RMSD bond length
0.003Å  
RMSD bond angle
0.579°  
Filename uploaded
Nsp15-pUp-f.pdb (uploaded on Feb 05, 2021 11:21 AM)  
Inserted
Feb 05, 2021