Structure of IDP52015

Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-2'',3''-Vanadate

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CSGID target
IDP52015 
PDB Id
7K1L (NCBI MMDB) 
Authors
Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Welk, L., Chang, C., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Sep 07, 2020 
Release Date
Sep 23, 2020 

Annotation

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Ligands

Ligand code Name Ligand type
UVC uridine-2',3'-vanadate biological
ACT crystallization
EDO ethylene diol crystallization
SO4 sulfate crystallization

Structure information

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Unit cell parameters

Space Group
P 63  
Unit Cell

a=150.83Å, b=150.83Å, c=110.73Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
49.37-2.25Å (2.29-2.25Å)  
Rall(%)
17.2 
Rwork(%)
16.7 (25.6) 
Rfree(%)
19.1 (29.2) 
Num. observed reflections
69805 (2975) 
Num. Rfree reflections
3532 (176) 
Completeness(%)
97.8 (83.0) 

Model parameters

Num Atoms
5483  
Num Waters
265  
Num Hetatoms
329  
Model mean isotropic B factor
50.720Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.494°  
Filename uploaded
NSP15-UV_refine_11.pdb (uploaded on Feb 25, 2021 11:24 AM)  
Inserted
Feb 25, 2021