Structure of IDP52003

Crystal structure of the Nsp3 Y3 domain from SARS-CoV-2

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CSGID target
IDP52003 
PDB Id
7RQG (NCBI MMDB) 
Authors
Stogios PJ, Skarina T, Chang C, Di Leo R, Savchenko A, Joachimiak A, Satchell KJF, Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Aug 06, 2021 
Release Date
Aug 18, 2021 

Annotation

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Ligands

Ligand code Name Ligand type

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=41.59Å, b=49.14Å, c=54.63Å
α=80.22, β=89.65, γ=77.94 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
28.05-2.17Å (2.29-2.17Å)  
Rall(%)
19.9 
Rwork(%)
19.7 (25.4) 
Rfree(%)
24.2 (30.6) 
Num. observed reflections
20466 (2431) 
Num. Rfree reflections
1023 (127) 
Completeness(%)
89.0 (81.0) 

Model parameters

Num Atoms
2995  
Num Waters
252  
Num Hetatoms
257  
Model mean isotropic B factor
51.370Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.453°  
RMSD dihedral angle
18.122°
 
Filename uploaded
7rqg.pdb (uploaded on Aug 18, 2021 9:52 AM)  
Inserted
Aug 06, 2021