Structure of IDP00115

Crystal Structure of the YaeQ Family Protein VPA0551 from Vibrio parahaemolyticus

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CSGID target
IDP00115 
PDB Id
7TCB (NCBI MMDB) 
Authors
Kim, Y., Joachimak, A., Mulligan, R., Maltseva, N., Gu, M., CSGID 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Dec 23, 2021 
Release Date
 

Annotation

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Ligands

Ligand code Name Ligand type
MSE modified residue

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=83.02Å, b=47.69Å, c=115.52Å
α=90.00, β=99.72, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.92-2.70Å (2.82-2.70Å)  
Rall(%)
22.5 
Rwork(%)
22.3 (35.9) 
Rfree(%)
26.5 (38.9) 
Num. observed reflections
24986 (2342) 
Num. Rfree reflections
1194 (110) 
Completeness(%)
95.4 (75.0) 

Model parameters

Num Atoms
5617  
Num Waters
9  
Num Hetatoms
9  
Model mean isotropic B factor
91.620Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.439°  
RMSD dihedral angle
13.89°
 
Filename uploaded
idp115_refine_16.pdb (uploaded on Dec 23, 2021 10:36 AM)  
Inserted
Dec 23, 2021