Structure of IDP52003

Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2, form 2

Edit deposit information
CSGID target
IDP52003 
PDB Id
7TI9 (NCBI MMDB
Authors
Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jan 13, 2022 
Release Date
Jan 26, 2022 

Annotation

Ligands

Ligand code Name Ligand type
GOL glycerol crystallization
CL crystallization

Structure information

Unit cell parameters

Space Group
F 2 2 2  
Unit Cell

a=84.27Å, b=111.76Å, c=145.99Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
27.91-2.73Å (3.11-2.73Å)  
Rall(%)
22.3 
Rwork(%)
22.2 (32.1) 
Rfree(%)
24.9 (39.7) 
Num. observed reflections
9705 (2751) 
Num. Rfree reflections
486 (145) 
Completeness(%)
97.8 (94.0) 

Model parameters

Num Atoms
879  
Num Waters
36  
Num Hetatoms
51  
Model mean isotropic B factor
83.720Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.502°  
RMSD dihedral angle
19.139°
 
Filename uploaded
7ti9.pdb (uploaded on Jan 26, 2022 9:02 AM)  
Inserted
Jan 14, 2022