Structure of IDP04712

Crystal Structure of the Soluble Domain of the Putative OmpA -Family Membrane Protein YPO0514 from Yersinia pestis

Edit deposit information
CSGID target
IDP04712 
PDB Id
7THW (NCBI MMDB
Authors
Kim, Y., Tesar, C., Chhor, G., Clancy, S., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 12, 2022 
Release Date
 

Annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
CA calcium ion crystallization
PO4 crystallization

Structure information

Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=47.86Å, b=123.10Å, c=54.18Å
α=90.00, β=89.97, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
49.59-2.20Å (2.28-2.20Å)  
Rall(%)
22.8 
Rwork(%)
22.6 (36.8) 
Rfree(%)
26.9 (40.2) 
Num. observed reflections
31152 (2295) 
Num. Rfree reflections
1542 (114) 
Completeness(%)
93.4 (72.0) 

Model parameters

Num Atoms
4795  
Num Waters
33  
Num Hetatoms
226  
Model mean isotropic B factor
74.780Å2  
RMSD bond length
0.003Å  
RMSD bond angle
0.545°  
RMSD dihedral angle
13.43°
 
Filename uploaded
idp4712_refine_55.pdb (uploaded on Jan 18, 2022 10:12 AM)  
Inserted
Jan 18, 2022