Structure of IDP64164

Crystal Structure of the Pirin Family Protein Redox-sensitive Bicupin YhaK Bound to Copper Ion from Yersinia pestis

Edit deposit information
CSGID target
IDP64164 
PDB Id
7TFQ (NCBI MMDB
Authors
Kim, Y., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 07, 2022 
Release Date
Jan 19, 2022 

Annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
CU biological
EDO ethylene diol crystallization
SIN succinic acid crystallization
FMT formate crystallization

Structure information

Unit cell parameters

Space Group
P 21 21 2  
Unit Cell

a=67.13Å, b=100.74Å, c=45.50Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
33.76-1.74Å (1.80-1.75Å)  
Rall(%)
16.7 
Rwork(%)
16.6 (23.3) 
Rfree(%)
19.6 (30.3) 
Num. observed reflections
31912 (2403) 
Num. Rfree reflections
1608 (125) 
Completeness(%)
94.4 (83.0) 

Model parameters

Num Atoms
2256  
Num Waters
181  
Num Hetatoms
204  
Model mean isotropic B factor
21.810Å2  
RMSD bond length
0.009Å  
RMSD bond angle
1.040°  
RMSD dihedral angle
14.4°
 
Filename uploaded
apc114164-CU-kae_refine_6.pdb (uploaded on Jan 05, 2022 4:56 PM)  
Inserted
Jan 05, 2022