Structure of IDP52003

SUD-C and Ubl2 domains of SARS CoV-2 Nsp3 protein

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CSGID target
IDP52003 
PDB Id
7THH (NCBI MMDB) 
Authors
Osipiuk, J., Jedrzejczak, R., Endres, M., Wydorski, P., Joachimiak, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Jerzy Osipiuk 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 11, 2022 
Release Date
Jan 19, 2022 

Annotation

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Ligands

Ligand code Name Ligand type
CL chloride crystallization
P6G hexaethylene glycol crystallization
EDO ethylene diol crystallization
IOD crystallization

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=30.17Å, b=113.69Å, c=109.69Å
α=90.00, β=93.02, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
49.39-1.32Å (1.36-1.32Å)  
Rall(%)
14.7 
Rwork(%)
14.5 (32.6) 
Rfree(%)
19.1 (34.4) 
Num. observed reflections
169821 (10773) 
Num. Rfree reflections
8660 (528) 
Completeness(%)
98.6 (84.9) 

Model parameters

Num Atoms
6420  
Num Waters
880  
Num Hetatoms
954  
Model mean isotropic B factor
23.620Å2  
RMSD bond length
0.009Å  
RMSD bond angle
1.450°  
Filename uploaded
7thh.pdb (uploaded on Feb 08, 2022 3:17 PM)  
Inserted
Feb 08, 2022