Structure of IDP96020

Crystal Structure of the C-terminal Ligand-Binding Domain of the LysR family Transcriptional Regulator YfbA from Yersinia pestis

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CSGID target
IDP96020 
PDB Id
7TRW (NCBI MMDB) 
Authors
Kim, Y., Tesar, C., Crawford, M., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 31, 2022 
Release Date
Feb 09, 2022 

Annotation

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Ligands

Ligand code Name Ligand type
3HB biological
PO4 crystallization
MSE modified residue

Structure information

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Unit cell parameters

Space Group
P 62  
Unit Cell

a=86.07Å, b=86.07Å, c=69.28Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
37.27-2.28Å (2.46-2.28Å)  
Rall(%)
20.0 
Rwork(%)
19.8 (28.3) 
Rfree(%)
23.4 (34.8) 
Num. observed reflections
14038 (2646) 
Num. Rfree reflections
722 (130) 
Completeness(%)
99.9 (99.0) 

Model parameters

Num Atoms
1716  
Num Waters
23  
Num Hetatoms
48  
Model mean isotropic B factor
81.720Å2  
RMSD bond length
0.003Å  
RMSD bond angle
0.591°  
RMSD dihedral angle
14.4°
 
Filename uploaded
apc114165-LBD-3hb_refine_11.pdb (uploaded on Mar 11, 2022 8:15 AM)  
Inserted
Mar 11, 2022