Structure of IDP96020

Crystal Structure of the DNA-Binding Domain of the LysR family Transcriptional Regulator YfbA from Yersinia pestis

Edit deposit information
CSGID target
IDP96020 
PDB Id
7TRV (NCBI MMDB
Authors
Kim, Y., Tesar, C., Crawford, M., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 31, 2022 
Release Date
Feb 09, 2022 

Annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
SO4 sulfate ion crystallization
CL chloride crystallization
GOL glycerol crystallization
FMT crystallization

Structure information

Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=30.94Å, b=146.27Å, c=33.70Å
α=90.00, β=90.20, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
32.84-1.80Å (1.86-1.80Å)  
Rall(%)
19.6 
Rwork(%)
18.7 (30.8) 
Rfree(%)
23.2 (33.9) 
Num. observed reflections
28637 (2503) 
Num. Rfree reflections
1520 (121) 
Completeness(%)
98.4 (87.0) 

Model parameters

Num Atoms
2799  
Num Waters
197  
Num Hetatoms
334  
Model mean isotropic B factor
32.830Å2  
RMSD bond length
0.002Å  
RMSD bond angle
0.383°  
RMSD dihedral angle
12.3°
 
Filename uploaded
apc114165-dbd_refine_27.pdb (uploaded on Mar 11, 2022 8:29 AM)  
Inserted
Mar 11, 2022