Structure of IDP96007

Crystal Structure of the Putative Oxidoreductase of DUF1479-containing Protein Family YPO2976 from Yersinia pestis Bound to CAPS

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CSGID target
IDP96007 
PDB Id
7TWC (NCBI MMDB) 
Authors
Kim, Y., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Feb 07, 2022 
Release Date
Feb 16, 2022 

Annotation

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Ligands

Ligand code Name Ligand type
MSE modified residue
CPS 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfona te crystallization
MG magnesium biological
PO4 crystallization
SO4 sulfate crystallization
GOL glycerol crystallization

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=115.96Å, b=54.70Å, c=93.16Å
α=90.00, β=124.17, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.14-1.85Å (1.89-1.85Å)  
Rall(%)
15.7 
Rwork(%)
15.5 (25.9) 
Rfree(%)
19.4 (28.7) 
Num. observed reflections
41723 (1855) 
Num. Rfree reflections
2102 (76) 
Completeness(%)
95.3 (62.0) 

Model parameters

Num Atoms
3451  
Num Waters
309  
Num Hetatoms
358  
Model mean isotropic B factor
23.820Å2  
RMSD bond length
0.012Å  
RMSD bond angle
1.108°  
RMSD dihedral angle
14.81°
 
Filename uploaded
apc114174-mgmn_refine_7.pdb (uploaded on Mar 11, 2022 9:02 AM)  
Inserted
Mar 11, 2022