Structure of IDP50845

Crystal structure of putative serine protease YdgD from Escherichia coli

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CSGID target
IDP50845 
PDB Id
7UXG (NCBI MMDB) 
Authors
Stogios P.J., Michalska K., Skarina T., Di Leo R., Savchenko A., Joachimiak A., Satchell K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
May 05, 2022 
Release Date
May 18, 2022 

Annotation

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Ligands

Ligand code Name Ligand type

Structure information

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Unit cell parameters

Space Group
P 65  
Unit Cell

a=98.14Å, b=98.14Å, c=43.44Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
42.50-2.24Å (2.34-2.24Å)  
Rall(%)
26.1 
Rwork(%)
25.8 (45.5) 
Rfree(%)
31.0 (42.0) 
Num. observed reflections
12699 (2655) 
Num. Rfree reflections
609 (122) 
Completeness(%)
99.8 (99.0) 

Model parameters

Num Atoms
1814  
Num Waters
0  
Num Hetatoms
0  
Model mean isotropic B factor
115.600Å2  
RMSD bond length
0.004Å  
RMSD bond angle
0.755°  
RMSD dihedral angle
19.101°
 
Filename uploaded
7uxg.pdb (uploaded on May 18, 2022 10:24 AM)  
Inserted
May 05, 2022