Structure of IDP96425

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with neomycin

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CSGID target
IDP96425 
PDB Id
7UUN (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., Di Leo, R., Osipiuk, J., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Nov 02, 2022 
Release Date
 

Annotation

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Ligands

Ligand code Name Ligand type
NMY neomycin biological
EDO ethylene diol crystallization

Structure information

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Unit cell parameters

Space Group
P 43 3 2  
Unit Cell

a=133.56Å, b=133.56Å, c=133.56Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
24.80-2.83Å (3.01-2.83Å)  
Rall(%)
21.3 
Rwork(%)
21.1 (36.3) 
Rfree(%)
25.0 (41.3) 
Num. observed reflections
10726 (1521) 
Num. Rfree reflections
537 (80) 
Completeness(%)
85.7 (52.0) 

Model parameters

Num Atoms
2185  
Num Waters
90  
Num Hetatoms
138  
Model mean isotropic B factor
81.710Å2  
RMSD bond length
0.005Å  
RMSD bond angle
0.885°  
RMSD dihedral angle
18.711°
 
Filename uploaded
7uun.pdb (uploaded on Nov 04, 2022 1:22 PM)  
Inserted
Nov 04, 2022