Structure of IDP06331
Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Listeria monocytogenes in the complex with IMP
Edit deposit information
- CSGID target
- IDP06331
- PDB Id
- 8EBC (NCBI MMDB)
- Authors
- Kim, Y.,Maltseva, N.,Makowska-Grzyska, M.,Osipiuk, J.,Joachimiak, A.,Center for Structural Genomics of Infectious Diseases (CSGID)
- Responsible person
- Youngchang Kim
- Responsible lab
- Argonne National Laboratory
- Deposition Date
- Aug 31, 2022
- Release Date
- Sep 07, 2022
Annotation
Ligands
| Ligand code | Name | Ligand type |
|---|---|---|
| IMP | Inosine monophosphate | biological |
| GOL | glycerol | crystallization |
| FMT | formate | crystallization |
Structure information
Unit cell parameters
- Space Group
- P 1
- Unit Cell
-
a=78.98Å, b=95.70Å, c=97.60Å
α=111.36, β=105.17, γ=107.61 - Solvent content
- Matthews coefficient
- Resolution range
- 39.88-2.49Å (2.53-2.50Å)
- Rall(%)
- 19.6
- Rwork(%)
- 19.4 (26.5)
- Rfree(%)
- 23.9 (34.8)
- Num. observed reflections
- 70725 (1113)
- Num. Rfree reflections
- 3507 (51)
- Completeness(%)
- 83.5 (33.0)
- Num Atoms
- 15820
- Num Waters
- 150
- Num Hetatoms
- 300
- Model mean isotropic B factor
- 42.680Å2
- RMSD bond length
- 0.002Å
- RMSD bond angle
- 0.427°
- RMSD dihedral angle
- 13.65°
- Filename uploaded
- nm-idp06331_refine_11.pdb (uploaded on Feb 05, 2023 11:49 PM)
- Inserted
- Feb 05, 2023