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Center for Structural Genomics of Infectious Diseases
MgRNA: Classification of Mg
2+
binding sites in RNA crystal structures
Mg
2+
site L8069 in
1NJI
(3Å) -- RIBOSOME :
Structure of chloramphenicol bound to the 50s ribosomal subunit
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2+
binding sites being investigated
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http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Binding environment of Mg
2+
L8069
Mg
2+
bound by non-RNA
Inner
sphere
O
ph
O
r
O
b
+N
b
Water
A3415, A4232, A6044, L2121, L7871
Other
ASN:L42(OD1)
Outer
sphere
P
out
U:A2546, U:A1749, A:A2583, G:A2584
R
out
B
out
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
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Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
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Antialiasing:
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
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http://olenka.med.virginia.edu/CrystUVa/
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dust@iwonka.med.virginia.edu
>