`
Center for Structural Genomics of Infectious Diseases
MgRNA: Classification of Mg
2+
binding sites in RNA crystal structures
Mg
2+
site 38078 in
3CC2
(2.4Å) -- RIBOSOME :
The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins
Viewer options: (
Jmol
|
JSmol
) | Close this window to return to the list of Mg
2+
binding sites being investigated
JSmol
: HTML5 canvas version of the
Jmol
molecule viewer
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Binding environment of Mg
2+
38078
Mg
2+
bound by non-RNA
Inner
sphere
O
ph
O
r
O
b
+N
b
Water
38525, 38575, 38576
Other
GLY:345(O), GLY:347(O), ASP:349(OD1)
Outer
sphere
P
out
G:02121, C:02122
R
out
B
out
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
Mouse click action:
Left-Click to rotate
Shift-Left-Click up & down to zoom
Right-Click for Jmol's context menu
Access console here
Additional controls:
Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
Spin:
Antialiasing:
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
Developed by Heping Zheng and Ivan Shabalin at Minor lab (
http://olenka.med.virginia.edu/CrystUVa/
)
For any help please contact <
dust@iwonka.med.virginia.edu
>